PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG038392t1
Common NameTCM_038392
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bZIP
Protein Properties Length: 171aa    MW: 18483.5 Da    PI: 10.4111
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG038392t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.15.8e-1686148163
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       +ke kr +r+ +NR++A+  R+RKka++ eLe++vk Le++N++L ++l++l++e + l++ v
  Thecc1EG038392t1  86 DKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLEKKNSELEERLSTLQNENQMLRQIV 148
                       5899*****************************************************999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000414.6E-585101IPR001630cAMP response element binding (CREB) protein
SMARTSM003381.7E-1586150IPR004827Basic-leucine zipper domain
PfamPF001701.2E-1487148IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.87588151IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.8E-1790150No hitNo description
SuperFamilySSF579592.56E-1390148No hitNo description
CDDcd147048.93E-1791142No hitNo description
PROSITE patternPS00036093108IPR004827Basic-leucine zipper domain
PRINTSPR000414.6E-5103123IPR001630cAMP response element binding (CREB) protein
PRINTSPR000414.6E-5123140IPR001630cAMP response element binding (CREB) protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MQEQPTSSIA ASSLPSSSER SSSSALQVEV KEGMESDEEI RRVPEIGGEA SAVPAAGREA  60
GSVAGPDRLQ PLGEGGQRKR GRSPADKENK RLKRLLRNRV SAQQARERKK AYLNELETRV  120
KDLEKKNSEL EERLSTLQNE NQMLRQIVKN TTASRRGGNG SSNAAADGTL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_A1e-16111150342Transcription factor HY5
2oqq_B1e-16111150342Transcription factor HY5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007013841.11e-116Basic-leucine zipper transcription factor family protein, 5
SwissprotO246464e-66HY5_ARATH; Transcription factor HY5
TrEMBLA0A061GNK51e-116A0A061GNK5_THECC; Basic-leucine zipper transcription factor family protein, 5
STRINGPOPTR_0018s01530.13e-80(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56912749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.12e-52bZIP family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]